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Pubs Wouter Duetz


Publications Wouter Duetz (40):
 
  • Van der Bend, R.L., Duetz W., Colen, A.M., Van Dam,K., Berden J.A. (1985) Differential effects of triphenyltin and 8-azido-ATP on the ATP synthesis, ATP-Pi exchange, and ATP hydrolysis in liposomes containing ATP synthase and bacteriorhodopsin. Arch. Biochem. Biophys. 241: 461-71
  • De Vries, G.J., Duetz, W., Buijs, R.M., van-Heerikhuize, J., and  Vreeburg, J.T. (1986) Effects of androgens and estrogens on the vasopressin and oxytocin innervation of the adult rat brain. Brain Res. 10: 399: 296-302
  • Breure, A.M., Duetz, W.A., Zoutberg, G.R., Mulder, R., Andel, J.G. van (1986) Measurement of the rate of hydrogen production by Clostridium butyricum using an amperometric method. FEMS Microbiol. Lett. 33, 289-292
  • Duetz, W.A., Andel, J.G. van (1991) Stability of TOL plasmid pWW0 in Pseudomonas putida  mt-2 under non-selective conditions in continuous culture. J. Gen. Microbiol 137, 1369-1374
  • Duetz, W.A., Winson, M.K., Andel, J.G. van, Williams, P.A. (1991) Mathematical analysis  of catabolic function loss in a population of Pseudomonas putida mt-2 during non-limited growth on benzoate. J. Gen. Microbiol. 137, 1363-1368
  • Duetz, W.A., Marqués, S., Jong, C. de, Ramos, J.L., Andel, J.G. van (1994) Inducibility of  the TOL Catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: Evidence of carbon catabolite repression control. J. Bacteriol. 176:2354-2361
  • Lloyd Jones, G., De Jong, C., Ogden, R.C., Duetz, W.A. & Williams, P.A. (1994)  Recombination of the bph (biphenyl) catabolic genes from plasmid pWW100 and their deletion during growth on benzoate. Applied & Environmental Microbiology 60:691-696
  • Duetz, W.A., De Jong, C., Williams, P.A. and Van Andel, J.G. (1994) Competition in chemostat between Pseudomonas strains using different pathways for the degradation of toluene. Applied and Environmental Microbiology 60:2858-2863.
  • Duetz, W.A., Marques, S., Wind, B., Ramos, J.L. Van Andel, J.G. (1996) Catabolite repression of the toluene degradation pathway in Pseudomonas putida (pWW0) under various limitations in chemostat culture. Applied and Environmental Microbiology 62:601-606
  • Barnes, M.R., Duetz, W.A., Williams, P.A. (1997) A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: Cloning and characterization of the hpp operon. Journal of Bacteriology 179: 6145-6153.
  • O'Connor, K., Duetz, W, Wind, B., Dobson, A.D.W. (1996) The effect of nutrient limitation on styrene metabolism in Pseudomonas putida CA-3 Applied and Environmental Microbiology 62: 3594-3599.
  • Duetz, W.A., Wind, B., Kamp, M., Van Andel, J.G. (1997) Effect of growth rate, nutrient limitation and succinate on expression of TOL pathway enzymes in response to m-xylene in chemostat cultures of Pseudomonas putida (pWW0). Microbiology 143: 2331-2338
  • Rutgers, M., Breure, A.M., Van Andel, J.G., Duetz, W.A. (1997) Growth yield coefficients of Sphingomonas sp. strain P5 on various chlorophenols in chemostat culture. Applied Microbiology and Biotechnology 48: 656-661
  • Filonov, A.E., Duetz, W.A., Karpov, A.V., Gaiazov-R.R., Kosheleva, I.A., Breure, A.M., Filonova, I.F., Van Andel, J.G., Boronin, A.M. (1997) Competition of plasmid-bearing Pseudomonas putida strains catabolizing naphthalene via various pathways in chemostat culture. Applied Microbiology and Biotechnology 48: 493-498
  • Duetz, W.A., Wind, B., Van Andel, J.G., Barnes, M.R., Williams, P.A., Rutgers, M. (1998) Biodegradation kinetics of toluene, m-xylene, p-xylene and their intermediates through the upper TOL pathway in Pseudomonas putida (pWW0). Microbiology, 144; 1669-1675
  • Rutgers, M., Van Bommel, S., Breure, A.M., Van Andel, J.G., Duetz, W.A. (1998) Effect of pH on the toxicity and biodegradation of pentachlorophenol by Sphingomonas sp. strain P5 in nutristat culture Environmental Toxicology and Chemistry. 17: 792-797
  • Li, Z., Feiten, H.J., Van Beilen, J.B., Duetz, W. and Witholt, B (1999). Preparation of optically active N-benzyl-3-hydroxypyrrolidine by enzymatic hydroxylation. Tetrahedron: Asymmetry 10 :1321-1333.
  • Duetz, W.A., Rüedi, L., Hermann, R. O'Connor, K, Büchs, J., and Witholt, B. (2000). Methods for intense aeration, growth, storage, and replication of bacterial strains in microtiter plates. Applied and Environmental Microbiology 66:2641-2646
  • Clerval, R., Kühner, M., Li, Z., Minas, W., Fjällman, A., Witholt, B. and Duetz, W.A. (2000) The come-back of high-throughput screening of wild-type microbial strains through the use of miniaturised growth systems and LC-MS. Bioworld 6: 24-26
  • Duetz, W.A. and Witholt, B. (2001). Effectiveness of orbital shaking for the aeration of suspended bacterial cultures in square deepwell microtiter plates. Biochemical Engineering Journal, 7: 113-115
  • Minas, W., Bailey, J.E., Duetz, W.A. (2001) Streptomycetes in microcultures: growth, production of secondary metabolites, and storage and retrieval in the 96-well format. Antonie van Leeuwenhoek, 78 (3-4): 297-305..
  • O'Connor, K.E., Witholt, B., Duetz, W.A. (2001) p-Hydroxyphenylacetic acid metabolism in Pseudomonas putida F6. J. Bacteriol. 183: 928-933.
  • O'Leary ND, O'Connor KE, Duetz W, Dobson ADW (2001) Transcriptional regulation of styrene degradation in Pseudomonas putida CA-3. Microbiology 147: 973-979
  • Duetz, W.A., Fjällman, A.H.M., Ren, S., Jourdat, C., and Witholt, B. (2001) Biotransformation of D-limonene to (+) trans-carveol by toluene-grown cells of Rhodococcus opacus PWD4. Appl. Environ. Microbiol., 67: 2829-2832.
  • Duetz, W.A., van Beilen, J.B. and Witholt, B (2001). Using proteins in their natural environment: potential and limitations of microbial whole-cell hydroxylations in applied biocatalysis. Curr. Opin. Biotechnol., 12:419–425
  • Li Z., van Beilen J.B., Duetz W.A., Schmid A., de Raadt A., Griengl H., Witholt B. (2002) Oxidative biotransformations using oxygenases. Curr. Opin. Chem. Biol. 6 (2): 136-144
  • Duetz, W.A., Bouwmeester, H., van Beilen, J.B. and Witholt, B. (March 2003) Biotransformation of limonene by bacteria, fungi, yeasts, and plants.  Appl. Microbiol. Biotechnol. 61:269–277
  • Spain, J.C., Hishino, S.F., Witholt, B., Tan, L.S., Duetz, W.A. (2003) Production of 6-Phenylacetylene Picolinic Acid from Diphenylacetylene by a Toluene-Degrading Acinetobacter Strain. Appl. Environ. Microbiol. 69:4037-4042
  • Van Beilen J.B., Li Z., Duetz W.A., Smits T.H.M., Witholt B. (2003). Diversity of alkane hydroxylase systems in the environment. OIL & GAS SCIENCE AND TECHNOLOGY-REVUE DE L INSTITUT FRANCAIS DU PETROLE 58: 427-440
  • Duetz, WA, Witholt, B. (2004) Oxygen transfer by orbital shaking of square vessels and deepwell microtiter plates of various dimensions. Biochemical Engineering Journal 17: 181–185
  • Brooks S.J., Doyle E.M., Hewage C., Malthouse J.P.G., Duetz W., O'Connor K.E. (2004). Biotransformation of halophenols using crude cell extracts of Pseudomonas putida F6. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 64: 486-492.
  • Zhang, J, Duetz, W.A., Witholt, B., and Li, Z. (2004). Rapid identification of new bacterial alcohol dehydrogenases for (R)- and (S)-enantioselective reduction of ß-ketoesters. Chem. Commun.  2120 – 2121
  • Van Beilen JB, Holtackers R, Luscher D, Bauer U, Witholt B, Duetz WA (2005). Biocatalytic production of perillyl alcohol from limonene by using a novel Mycobacterium sp cytochrome P450 alkane hydroxylase expressed in Pseudomonas putida. Appl. Environ. Microbiol. 71: 1737-1744
  • Duetz, W.A., Kuhner M., Lohser R. (2006) Microbial and cell growth in microtiter plates, GENETIC ENGINEERING NEWS 26 (11): 44-46 JUN 1 2006
  • Duetz, W.A. (2007) Microtiter plates as mini-bioreactors: miniaturization of fermentation methods, TRENDS in Microbiology 15 (10): 470-475
  • Rashidi H, Akhtar MT, van der Kooy F, Verpoorte, R, and Duetz, W.A. (2009) Hydroxylation and further oxidation of delta9-tetrahydrocannabinol by alkane-degrading bacteria. APPLIED AND ENVIRONMENTAL MICROBIOLOGY  75:7135-7141  
  • Duetz, W.A., Chase, M., Bills, G. (2010)  Miniaturization of Fermentations. Chapter 8, ASM Manual of Industrial Microbiology and Biotechnology, R. H. Baltz, J. E. Davies, A. L. Demain (eds)
 
Patents:
 
  • Duetz, W.A., and Witholt, B (2000) Method and apparatus for sampling frozen cultures of microorganisms and/or eukariotic cells simultaneously and independently of each other, Patent Application PCT/NL00/00426 .
  • Duetz, W.A., Jourdat, C., Witholt, B. (2000) Process for the preparation of trans-carveol and/or carvone, PCT application November 2000
  • Duetz, W.A., Jourdat, C., Witholt, B. (2001) Process for the preparation of perillyl alcohol, PCT application February 2001
  • Duetz, W.A. November 2008. An apparatus and a method for investigation of microtiter plates subjected to orbital shaking. Patent 86185NL00 (note: this patent application concerns the application of flatbed scanning technology for the quantification of biomass in microtiter plate wells during a short interruption in their orbital shaking)
 
 
Presentations at international congresses and symposiums:
 
  • IUMS Congress, Prague, July 3-8, 1994, "Formation and turnover rates of catabolic enzymes in xenobiotic-degrading bacteria growing in chemostat culture"
  • EU-Symposium "Remediation of Contaminated Soils", Nancy, March 2-3, 1995, "Xenobiotic degradation by bacteria"
  • Symposium "Molecular Basis for Biodegradation of Pollutants", Madrid, March 27-29, 1995, "The composition of the toluene-degrading bacterial population in soil: the occurrence of different pathways, genera and their susceptibility to catabolite repression"
  • EERO Workshop "Enzymatic and Genetic Aspects of Environmental Biotechnology", Moscow region, June 21-25 1995, "Competition behaviour of Gram-negative and Gram-positive toluene-degraders in chemostats and soil microcosms"
  • TUB Symposium “ Degradation of organic pollutants”,  Mallorca, June 29 - July 3, 1996, “Comparison of various Pseudomonas and Rhodococcus strains with respect to the conversion rate and affinity for BTEX compounds”
  • Pseudomonas 97, Madrid, 4-9 September, 1997. Biodegradation kinetics of toluene, m-xylene, p-xylene and their intermediates through the upper TOL pathway in Pseudomonas putida (pWW0).
  • 1st International Symposium on Applied Shaking Technology, Mai 20-21, 1999. Basel, Switzerland, Growth of aerobic bacteria in microtiter plates: optimization of oxygen transfer
  • 1st International Symposium on Synthesis, Screening and Sequencing, Achema, May 23-25, 2000, Frankfurt, Germany, Parallel growth, storage, and replication of large collections of aerobic microbial strains in microtiter plates: use for high throughput screening for new biocatalysts and secondary metabolites.
  • 2nd International Symposium on Applied Shaking technology, New York, April 2001. Oxygen transfer rates in square vessels and deepwell microtiter plates
  • Biochemical Engineering XII, Sonoma, San Fransisco, June 2001 Parallel growth, storage, and replication of large collections of aerobic microbial strains in microtiter plates: use for high throughput screening for new biocatalysts and secondary metabolites
  • ASM general meeting, Salt Lake City, May 2002. Use of a miniaturized screening system for the discovery of new hydroxylation reactions.
  • SGM meeting, Dublin, September 2003. Screening for microbial oxidoreductases; approaches and results
  • DECHEMA meeting, Eisenach, May 2004. "Simultane und integrierte Bioprozeßentwicklung": Parallel aerobic growth, storage, and replication of large microbial collections in microtiter plates
  • Tsukuba, Workshop at ICCC-10, October 2005. Parallel aerobic growth, storage, and replication of large microbial collections in microtiter plates
  • Conference on Natural products Discovery, Santa Fe, June 4-8, 2006, "Microtiter plate wells as mini-bioreactors"
  • CEP Course on "Rational methods for microbial strain improvement". Mumbai, India, April 9 -13, 2007, "Microtiter plate wells as mini-bioreactors".
  • RAFT meeting, Florida. November 4-7, 2007, "High-quality cultivation of microorganisms in microtiter plates".
  • SGM meeting Edinburgh, 7-11 September 2009, "Cultivation and biotransformation in microtiter plates", by Wouter Duetz (part of a session organized by Krist Gerneay, called "Cultivating and sensing microbes in micro-scale devices"
  • RAFT meeting, San Diego, 8-11 November 2009 "Cultivation in microtiter plates, quantification of biomass using flatbed scanning technology" by Wouter Duetz".
  • 1-5 August, 2010, SIM, Annual Meeting and Exhibition, talk Wouter Duetz entitled: "Cultivation in various types of microtiter plates, and quantification of cell mass using flatbed scanning and image analysis software"
  • 29 September 2011,  ECAB 2011, Berlin, Shaking Technology-Session, talk Wouter Duetz entitled: "How to turn wells of microtiter plates into high-quality "mini-bioreactors", see: www.ecce2011.de/ecab2011.html